r-bioc-monocle

dep: r-api-4.0

Package not available

dep: r-api-bioc-3.20

Package not available

dep: [r-cran-matrix] (>= 1.2-6)

GNU R package of classes for dense and sparse matrices

dep: [r-bioc-biobase]

base functions for Bioconductor

dep: [r-cran-ggplot2] (>= 1.0.0)

implementation of the Grammar of Graphics

dep: [r-cran-vgam] (>= 1.0-6)

GNU R package for estimating vector generalized additive models

dep: [r-cran-ddrtree] (>= 0.1.4)

GNU R learning principal graphs with DDRTree

dep: [r-cran-igraph] (>= 1.0.1)

GNU R network analysis and visualization

dep: [r-bioc-biocgenerics]

generic functions for Bioconductor

dep: [r-bioc-hsmmsinglecell] (>= 0.101.5)

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts

dep: [r-cran-plyr]

tools for splitting, applying and combining data

dep: [r-cran-cluster]

GNU R package for cluster analysis by Rousseeuw et al

dep: [r-cran-combinat]

GNU R package with utilities for combinatorics

dep: [r-cran-fastica]

GNU R package for ICA and Projection Pursuit

dep: [r-cran-irlba] (>= 2.0.0)

GNU R fast truncated SVD, PCA and symmetric eigendecomposition

dep: [r-cran-matrixstats]

GNU R methods that apply to rows and columns of a matrix

dep: [r-cran-rtsne]

GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

dep: [r-cran-mass]

GNU R package of Venables and Ripley's MASS

dep: [r-cran-reshape2]

Flexibly reshape data: a reboot of the reshape package

dep: [r-cran-leidenbase] (>= 0.1.9)

GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function

dep: [r-bioc-limma]

linear models for microarray data

dep: [r-cran-tibble]

GNU R Simple Data Frames

dep: [r-cran-dplyr]

GNU R grammar of data manipulation

dep: [r-cran-pheatmap]

GNU R package to create pretty heatmaps

dep: [r-cran-stringr]

Make it easier to work with strings

dep: [r-cran-proxy]

GNU R distance and similarity measures

dep: [r-cran-slam]

GNU R sparse lighweight arrays and matrices package

dep: [r-cran-viridis]

GNU R package for color maps from matplotlib

dep: [r-bioc-biocviews]

Categorized views of R package repositories

dep: [r-cran-rann] (>= 2.5)

Fast Nearest Neighbour Search Using L2 Metric

dep: [r-cran-rcpp] (>= 0.12.0)

GNU R package for Seamless R and C++ Integration

dep: [libc6] (>= 2.14)

GNU C Library: Shared libraries

dep: [libgcc-s1] (>= 3.0)

GCC support library

dep: [libstdc++6] (>= 14)

GNU Standard C++ Library v3

sug: [r-cran-hmisc]

GNU R miscellaneous functions by Frank Harrell

sug: [r-cran-knitr]

GNU R package for dynamic report generation using Literate Programming

sug: [r-cran-seurat]

Tools for Single Cell Genomics

sug: [r-bioc-scater]

Single-Cell Analysis Toolkit for Gene Expression Data in R

sug: [r-cran-testthat]

GNU R testsuite